PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50986.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 258aa    MW: 29144.9 Da    PI: 5.0857
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50986.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.22.2e-0786176590
        FAR1   5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +YA + GF++ +++++   +  +  + r++  +ke + +  k       +  ++r+++++ tgCk  ++   e ++ +++ +++l+HnH+l 
  Dca50986.1  86 DYAMKKGFEIYTRSNNLMeEYLEAGVGRQYGGNKEPRYHMMKMLrlackKGGRKRSENSNVTGCKVFFEAAVE-NELFVIRSCRLDHNHDLD 176
                 7********9988887762444555677777777766666555589987777888999999*********999.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-685177IPR004330FAR1 DNA binding domain
CDDcd092723.09E-22194240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAGILEEIFD LNVDYDEEVE SDSNSLPILE DENKVQEIEY NAQPSNLMEQ AVITLEGQNA  60
NNVEVTEPSV GMTFENCDSF AAFCFDYAMK KGFEIYTRSN NLMEEYLEAG VGRQYGGNKE  120
PRYHMMKMLR LACKKGGRKR SENSNVTGCK VFFEAAVENE LFVIRSCRLD HNHDLDPENS  180
RFTVSARARR TPAVFHERTK HIEIDCHFVR DAIKKGLIAP SYVPTSTQLA DVLTKSLGAP  240
QFHSLIGKIG VRNLYAPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.45e-06FAR1-related sequence 2